QuEST - Quantitative Enrichment of Sequence Tags | Tool name | QuEST - Quantitative Enrichment of Sequence Tags |
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| URL | http://mendel.stanford.edu/sidowlab/downloads/quest/ |
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| Important features | 1. It is an efficient tool for chip seq analysis for motif detection and peak calling.
2. It is a quantitative enrichment of short tags which can handle broad peak .
3. It can analyse results from ucsc genome browser for both raw data and enrichment profiles. |
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| Citations | Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods. 2008 Sep;5(9):829-34. PubMed PMID: 19160518; PubMed
Central PMCID: PMC2917543. |
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free, Downloadable |
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| Platform | Illumina/Solexa |
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